Sandrine Demanèche Environmental Microbial Genomics Group

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Laboratoire Ampere
Ecole Centrale de Lyon . France
(33) 472 18 65 14


Education | Research Interests | Publications | Curriculum Vitae

  Sandrine Demaneche  
   
   
  Sandrine Demanèche
 

Bioengineering.
Laboratoire Ampère, UMR CNRS 5005
Ecole Centrale de Lyon
36 avenue Guy de Collongue
69134 Ecully cedex
France

  sandrine.demaneche@ec-lyon.fr
  Phone: (33) 4 72 18 64 94
Fax: (33) 4 78 43 37 17

 

 

top EDUCATION

- Ph.D. Microbial Ecology (2000), University of Lyon
- M.S. Microbial Ecology (1996), University of Lyon
- B.S. Biochemistry (1995)
- B.T.S. Biology and Biochemistry (1993), ESTBB Lyon

top RESEARCH INTERESTS

My research interests focused many facets of microbial ecology. During my PhD, I studied the involvement of horizontal gene transfers (HGT) in the adaptation and evolution of bacteria to their environments with a particular look to the transforming effect of lightning-mediated electrical conditions. During the last few years, I’ve also investigated the genetic potential of environmental bacteria with metagenomic approaches. And more recently, I began studying horizontal gene transfer between transgenic plants and soil bacteria.

top PUBLICATIONS

Demaneche, S., L. Schauser, L. Dawson, L. Franqueville and P. Simonet. 2017. Microbial soil community analyses for forensic science: Application to a blind test. Forensic. Sci. Int. 270:153-158. d.

O. Fabrègue, E. Navarro, R. Scorretti, J. Reboulet, P. Simonet, L. Dawson and S. Demanèche. (2015) A software to align fluorescent data between Agilent 2100 Bioanalyzer arrays: application to soil microbial community analysis. BioTechniques, BT-S-15-00117, revision.

L. Ufarté, S. Bozonnet, E. Laville, D. A. Cecchini, S. Pizzut-Serin, S. Jacquiod, S. Demanèche, P. Simonet, L. Franqueville, G. Potocki-Véronèse (2015) Functional metagenomics: construction and high-throughput screening of fosmid libraries for discovery of novel carbohydrate-active enzymes. In: Methods in Molecular Biology, Microbial Environmental Genomics, Chapter 6. Accepted.

Y. Le Digabel, S. Demanèche, Y. Benoit, F. Fayolle-Guichard and T. M. Vogel (2014) Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments. Journal of Hazardous Materials, 279:502-510.

S. Jacquiod, S. Demanèche, L. Ausec , T.O. Delmont, L. Franqueville, Z.  Xu, V. Dunon, C.  Cagnon, I. Mandic-Mulec, T.M. Vogel and P. Simonet (2014) Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology, 190:18-29.

Y. Le Digabel, S. Demanèche, Y. Benoit, T. M. Vogel and F. Fayolle-Guichard (2013) Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer. Applied Microbiology and Biotechnology, 97:10531-10539

S. Demanèche, J-M Monier, E. Dugat-Bony and P. Simonet (2011) Exploration of horizontal gene transfer between transplastomic tobacco and plant associated bacteria. FEMS Microbiology Ecology, vol. 78, p. 129-136.

S. Demanèche, C. Brard, O. Lima, F. Binet and P. Simonet (2011) Development of a new tool to improve gene transfer frequency calculations. Journal of Microbiological Methods, vol. 86, p.255-257.

J-M Monier, S. Demanèche, T. Delmont, A. Mathieu, T.M. Vogel and P. Simonet (2011) Metagenomic exploration of antibiotic resistance in soil. Current Opinion in Microbiology, vol. 14, p. 229-235.

S. Demanèche, J-P.Chapel, L. Jocteur Monrozier, and H. Quiquampoix (2009) Dissimilar pH-dependent adsorption features of bovine serum albumin and a-chymotrypsin on mica probed by AFM. Colloids and Surfaces B: Biointerfaces, vol. 70, p. 226-231.

S. Demanèche, M. M. David, E. Navarro, P. Simonet, and T. M. Vogel (2009) Evaluation of functional gene enrichment in a soil metagenomic clone library. Journal of Microbiological Methods, vol. 76, p. 105-107.

S. Demanèche, L. Philippot, M. M. David, E. Navarro, T.M. Vogel and P. Simonet (2009) Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. Applied and Environmental Microbiology, vol. 75, n° 2, p. 534-537.

A. Ginolhac, S. Demanèche, C. Jarrin, P. Robe, F. Lefèvre, R. Nalin, G. Perrrière, T.M. Vogel et P. Simonet (2008) Analyse et exploitation de la diversité génétique des polykétides synthases de type I dans l’ADN métagénomique d’un sol. Les actes du BRG, vol. 7, p. 201-213.

S. Demanèche, H. Sanguin, J. Poté, E. Navarro, D. Bernillon, P. Mavingui, W. Wildi, T.M. Vogel and P. Simonet (2008) Antibiotic resistance soil bacteria in transgenic plant fields. Proceedings of the National Academy of Science, vol. 105, n° 10, p.3957-3962.


S. Demanèche, H. Cérémonie, F. Buret, P. Auriol, T.M. Vogel and P. Simonet (2005) Gene transfer in soil induced by lightning . XIVth International Symposium On High Voltage Engineering, 25-29 august 2005, Beijin (China) proceeding B07.

S. Demanèche, C. Meyer, J. Micoud, M. Louwagie , J. C. Willison and Y. Jouanneau (2004) Identification and functional analysis of two aromatic ring-hydroxylating dioxygenases from a Sphingomonas strain degrading various polycyclic aromatic hydrocarbons. Applied and Environmental Microbiology, vol. 70, n° 11, p. 6714-6725.

S. Demanèche, L. Jocteur-Monrozier, J-P.Chapel and P. Simonet (2002) Influence of plasmid conformation and inserted sequence homology on natural transformation of Acinetobacter sp. Annals of Microbiology, vol. 52, n° 1, p. 61-69.

S. Demanèche, F. Bertolla, F. Buret, R. Nalin, A. Sailland, P. Auriol, T.M. Vogel and P. Simonet (2001) Laboratory-scale evidence for lightning-mediated gene transfer in soil. Applied and Environmental Microbiology, vol. 67, n° 8, p. 3440-3444.

S. Demanèche, E. Kay, F. Gourbière and P. Simonet (2001) Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil. Applied and Environmental Microbiology, vol. 67, n° 6, p. 2617-2621.

S. Demanèche, L. Jocteur-Monrozier, H. Quiquampoix and P. Simonet (2001) Evaluation of biological and physical protection against nuclease degradation of clay-bound plasmid DNA. Applied and Environmental Microbiology, vol. 67, n° 1, p. 293-299.


PATENT

R. Nalin, S. Demanèche, F. Bertolla, F. Buret, P. Auriol, T. Vogel and P. Simonet (2001) Methods of creating genetic diversity. PCT/EP 02/07946 (EP 01 401944.2 du 19/07/2001).


POSTERS

S. Demanèche, S. Djennane, M. Beuve, P. Simonet and O. Lemaire. (2015) Assessing the impact of transgenic grapevine rootstocks on the environment using NGS. 6th FEMS congress of European Microbiologists, Maastricht, The Netherlands.

S. Demanèche, M. Beuve, S. Vigneron, S. Djennane, E. Vigne, A. Marais, T. Candresse, P. Simonet and O. Lemaire. (2014) Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenes. Colloque Bioinformatique pour la Génomique Environnementale, Villeurbanne, France.

S. Demanèche, A. Mathieu and P. Simonet (2013) Gene transfer from genetically modified plants to micro-organisms. Second Thünen Symposium on soil metagenomics, Braunschweig, Allemagne.

S. Demanèche, M. Beuve, S. Vigneron, S. Djennane, E. Vigne, A. Marais, T. Candresse, T.M. Vogel, P. Simonet and O. Lemaire. (2013) Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenes. Colloque BiomInnov, la biologie moléculaire appliquée à l’Environnement et au service de l’innovation industrielle. Romainville, France.

S. Demanèche and P. Simonet (2012) Gene transfer from genetically modified plants to microorganisms. 12th International Symposium on the Biosafety of Genetically Modified Organisms (12th ISBGMO), Saint-Louis, USA.

S. Demanèche (2011) Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. Colloque Génomique Environnementale Lyon 2011, Ecully, France.

S. Demanèche, C. Brard, F. Binet and P. Simonet (2011) Development of a new tool to improve calculation of gene transfer frequency. 11th symposium on bacterial genetics and ecology (BAGECO-11), Corfou, Grèce.

S. Demanèche, J-M Monier, E. Dugat-Bony and P. Simonet (2011) Likelihood of horizontal gene transfer between transplastomic tobacco and plant associated bacteria. Conference for the ecology of soil microorganisms (ESM), Prague, République Tchèque.

S. Demanèche, H. Sanguin, J. Poté, E. Navarro, D. Bernillon, P. Mavingui, W. Wildi, T.M. Vogel and P. Simonet (2009) Maîtrise de la dispersion des gènes de résistance aux antibiotiques en milieux naturels. 4ème Colloque de l’association Francophone d’Ecologie Microbienne, Ecully, France.

S. Demanèche, L. Philippot, M. M. David, E. Navarro, T.M. Vogel and P. Simonet (2009) Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. 10th symposium on bacterial genetics and ecology (BAGECO-10), Uppsala, Suède.

S. Demanèche, E. Navarro, M. David, L. Philippot, R. Nalin, A. Faugier, J. Züfle, P. Simonet, T.M. Vogel (2008) Metagenomic library selection and validation by pyrosequencing. 12th International Symposium on Microbial Ecology, Cairns, Australia.

S. Demanèche, H. Sanguin, J. Poté, E. Navarro, D. Bernillon, P. Mavingui, W. Wildi, T.M. Vogel and P. Simonet (2007) Résistances bactériennes aux antibiotiques dans les sols. Colloque d’écologie microbienne, La Grande Motte, France.

S. Demanèche, J. Poté, H. Sanguin, D. Bernillon, P. Mavingui, W. Wildi, T.M. Vogel and P. Simonet (2007) Antibiotic Resistance in Soil Bacteria related to Transgenic Plants Impact: a Field Study. 9th symposium on bacterial genetics and ecology (BAGECO-9), Wernigerode, Allemagne.

H. Quiquampoix , J. Abadie, M.H. Baron, J.P. Chapel, P Déjardin, S. Demanèche, J. Grosclaude, C. Le Guernevé, S. Noinville, D. Rapp, M. Revault, H. Rezaei, P. Rigou, S. Staunton, and E.N. Vasina (2004) Mechanisms of protein adsorption and fate of prions in soil. ISMOM ("interactions of Soil Minerals with Organic Components and Microorganisms"). Wuhan, Chine. Congrès.

S. Demanèche, J. Willison and Y. Jouanneau (2003) Identification of multiple ring-hydroxylating dioxygenase genes in a chrysene-degrading  bacterial strain. 1st FEMS congress of European Microbiologists, Ljubljana, Slovénie.

H. Quiquampoix, S. Demanèche, J.P. Chapel, S. Servagent-Noinville and M.H. Baron (2003) Mechanisms of interaction of hard and soft proteins with mineral surfaces. 16th International Symposium on Environmental Biogeochemistry, Oirase, Japon.

S. Demanèche, J. Willison and Y. Jouanneau (2002) Identification of the genes responsible for PAH degradation in a chrysene-degrading  bacterial strain. Xth International Congress of Bacteriology and Applied Microbiology, Paris, France.

S. Demanèche, J. Willison and Y. Jouanneau (2002) Degradation of chrysene by Sphingomonas sp. CHY-1 : identification of catabolic specific enzymes. Microbiology of hydrocarbons: state of the art and perspectives, Rueil-Malmaison, France. Colloque.

S. Troussieux, L. Jocteur-Monrozier and P. Simonet (1999) Protection role of illite and behaviour of genes located on two different plasmids for transformation of Acinetobacter calcoaceticus. 6th symposium on bacterial genetics and ecology (BAGECO-6), Florence, Italie.

ORAL COMMUNICATIONS

S. Demanèche, M. Beuve, S. Djennane, P. Simonet and O. Lemaire. (2014) Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenes. 13th International Symposium on the Biosafety of Genetically Modified Organisms (13th ISBGMO), Cape Town, South Africa.

S. Demanèche, Y. Le Digabel, N. Jabar, Y. Benoit, F. Fayolle-Guichard and T. M. Vogel (2014) Ecologie microbienne de la dégradation de l’ETBE et du MTBE : diversité bactérienne et expression de gènes. Journées d'Ecotoxicologie microbienne, 5èmes journées thématiques  de l’Association Francophone d’Ecologie Microbienne (AFEM5), Banyuls-sur-Mer, France.

S. Demanèche, A. Mathieu et P. Simonet (2013) Transferts de gènes de plantes génétiquement modifiées aux bactéries. 6ème Colloque de l’association Francophone d’Ecologie Microbienne (AFEM VI), Parent, France.

S. Demanèche and P. Simonet (2008) Horizontal gene transfer between transgenic plants and soil bacteria. 10th International Symposium on the Biosafety of Genetically Modified Organisms, Wellington, New Zealand.

S. Demanèche, H. Sanguin, J. Poté, E. Navarro, D. Bernillon, P. Mavingui, W. Wildi, T.M. Vogel and P. Simonet (2007) Antibiotic resistance soil bacteria in transgenic plant fields. 2nd symposium on antimicrobial resistance in animals and the environment (ARAE 2007), Tours, France.

S. Troussieux
, L. Jocteur-Monrozier and P. Simonet (1999) Genes located on two different replicons do not exhibit a similar behaviour for transformation of Acinetobacter calcoaceticus in microcosm conditions mimicking soil environments. First symposium of the EU-concerted action on "Mobile elements" contribution to bacterial adaptability and diversity (MECBAD), Le Mont Ste Odile, France.

top CURRICULUM VITAE (Download my complete CV jpeg)

 
   

DEMANECHE